Summaries of mosquito abundance — adci • dynamAedes

Summaries of mosquito abundance at each life stage and sub-stage for each day.

adci(
  input_sim = NULL,
  stage = NULL,
  sub_stage = NULL,
  breaks = c(0.25, 0.5, 0.75),
  eval_date = NULL,
  n.clusters = 1,
  type = "N"
)

Arguments

input_sim: matrix. dynamAedes compressed or uncompressed output matrix.
stage: character. "Eggs", "Juveniles", "Adults", or "DiapauseEggs" or any shorter attempt longer than 3 letters.
sub_stage: character. For uncompressed outputs only, defines the substage of interest. Please see cheat-sheet table.
breaks: numeric vector. Quantile breaks, default the first, the second and the third quartile: c(0.25,0.5,0.75).
eval_date: positive integer. Define the day to evaluate from the first day of introduction. Note that this can be particularly demanding in the case of spatial outputs.
n.clusters: integer. Number of parallel processes.
type: character. The type of output. Set "O" to force overall time-only summary over spatial. Default is "N" (normal).

Returns a data frame or a raster with the summary of mosquito abundance at each life stage for each day.