- Substitutes
legend.pos with legend.position in vignettes.
- Adds reference file for life history traits
AedeslifeHistoryList.
- Adds function
spreader.
- Adds vignettes 4 (Uncompressed output) and 5 (spreader).
- Fixes minor issues in
adci.
- Fixes summary print for punctual and local scale.
- Adapts all auxiliary functions to the
dynamAedesClass output.
- Adds
adci function that allows for substages statistics and merges space/non-space outputs.
- Adds
summary and max methods for class dynamAedesClass.
- Removes dplyr from vignettes and packages.
- Introduces output object as a dynamAedesClass
- Allows for species abbreviation at least 2 characters long (e.g., “ae”)
- Removes definitely rgdal from package
- Clears NAMESPACE
- Substitutes
fields::rdist with terra::distance which solves a bug in active dispersal
- Adds a switch for active dispersal only
pDispersal=FALSE
- Removes warnings changing Beta function with polynomial for egg survival in Aedes aegypti
- Raised 0 hatching rate to 15°C for aegypti
- Other minor cosmetic changes
- Modify verbose option for debugging, now an integer with values 0 (silent), 1 or 2.
- Transitioning from ‘rgdal’ and ‘sp’ to ‘terra’
- Transitioning from ‘insol’ to ‘geosphere’
- Removing block-loading of ‘tidyverse’ (speeding up loading?)
- Helper functions not exported any more
- Adding rgdal in the description
- Adding website with examples for the three scales (pkgdown)
- Coordinates now internally transformed (if not in lat/long) for the derivation of the photoperiod
- Adding option coords.proj4 to specify coordinate projection (in proj4 format)
- Renaming dynamAedes as dynamAedes.m
- At regional scale now diapause derived pixel by pixel using the photoperiod of input coordinates.
- You can now introduce diapause eggs using dynamAedes argument “intro.degg”
- Minor bug fix for idci and icci functions
- Change option name for passive dispersal; option to use a numeric vector for average passive dispersal
- Reshape vignette (simplified) for packaging
- Change vignette builder to knitr
- Add an initial test for reproducibility
- Add code example for dynamAedes
- All functions reshaped for publication
- Physiological rates updates
- Vignette updated
- Enhanced physiological rates for koreicus/japonicus
- Proportion of diapausing eggs dependent on photoperiod
- Diapausing eggs with fixed survival
- Diapausing eggs are laid only if photoperiod is decreasing and hatch only if photoperiod is rising.
- Increased minimum duration of egg and juvenile stages to match species biology
- Functions to process the output are now integrated
- Adding dispersal kernel for albopictus
- README drafted
- Package now compiles with CRAN standards
First release which includes functions to: * Simulate life cycle